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pProRep works as a standalone web-based proteomic data analysis suite, but can also be configured to operate with other data-types, databases and webservices.

pProRep supports operation with YassDB, a 3-tier application for the organisation of data from mass spectrometry experiments. The database system itself is developed in PostgreSQL, a webservice layer contacts the database, whereas its web client offers a user interface to access the data. In order to make pProRep working with YassDB, you need updated data-interaction layers. To receive the latest version of this layer, please contact Kris Laukens.